List of Payroll Software for SMBs in 2025

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List of the Best Payroll Software For Small Business as of May 2025

9.2

Spot Score

Paychex Flex
RECOMMENDED

Streamline your payroll with ease.

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3.7

(771)

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Product Description

Paychex Flex is a cloud-based payroll software for mid- to large-sized employers, delivering the tools you need to run your business and support your people. This payroll system provides everything you need in just one simple package. It includes: W-2 and 1099 printing, Payroll processing, ...

Pricing

Paychex Flex offers custom pricing plan

9.8

Spot Score

Paycom

Efficient payroll made simple.

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4.1

(1216)

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Product Description

Paycom is the fastest and most user-friendly payroll software out there. With Paycom, you can run payroll online or download to use on your own computer. Pay employees by check, direct deposit in one easy step. Track pay and deductions all in one place to reduce errors and maximize compliance. ...

Pricing

Paycom offers custom pricing plan

9.7

Spot Score

Gusto

Modern HR for Growing Businesses

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3.7

(857)

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Product Description

Gusto is a comprehensive HR platform designed to help businesses of all sizes thrive. Whether you’re just starting out or scaling rapidly, Gusto provides the tools and guidance you need to grow and nurture your team. Trusted by over 300,000 businesses across the U.S., Gusto combines payroll, ...

Pricing

Free Trial available, Try Now

Starts from $40/user/month when monthly

9.5

Spot Score

Zenefits

Streamline payroll and stay compliant with ease.

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4.1

(545)

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Product Description

Zenefits Payroll handles all your company's payroll needs. The software is automatically updated with payroll tax tables, so there's no need for you to manually file quarterly updates. Zenefits helps you manage employees, and ensure you're compliant with all applicable payroll laws.

Pricing

Free Trial available, Try Now

Zenefits offers custom pricing plan

9.4

Spot Score

OnPay

Streamline your payroll process and save time and money.

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4.8

(325)

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Product Description

OnPay is an intuitive online payroll software designed to meet the needs of supervisors, managers, payroll specialists and people who manage pay for hourly or salaried staff. OnPay helps companies of all sizes reduce costs for processing payroll checks, making tax reports, tracking down pay ...

Pricing

Free Trial available, Try Now

Starts from $40/Month

9.4

Spot Score

Remote.com

Effortlessly manage your remote workforce.

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4.4

(81)

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Product Description

Remote.com is a remote work management platform that simplifies global payroll, compliance, and workforce administration for businesses of all sizes. It seamlessly integrates with HR systems, centralizing payroll data for security and accuracy. The platform enables effortless onboarding with ...

Pricing

Starts from $29/employee/month when monthly

9.3

Spot Score

factoHR

Streamline HR management and focus on growth.

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4.5

(10)

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Product Description

FactoHR is a mobile-first, fully integrated HCM platform designed to empower businesses in building a high-performing workforce while streamlining HR operations. The solution offers a feature-rich mobile app, enabling employees to access their data and perform HR tasks anytime, anywhere, ...

Pricing

Free Trial available, Try Now

factoHR offers custom pricing plan

9.2

Spot Score

Justworks

Efficient payroll management on the go.

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4.5

(160)

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Product Description

Justworks is payroll software that offers international payroll, payroll tax filing and realtime benefits administration. The Justworks app is a simple way for teams to bill their hours directly from their iPhone or Android devices. This mobile solution provides employees with a transparent ...

Pricing

Free Trial available, Try Now

Starts from $8/user/month when monthly

9.2

Spot Score

QuickBooks Payroll

Streamline your payroll process with ease.

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4.0

(52)

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Product Description

QuickBooks Payroll makes it easy to stay on top of your HR needs. It’s payroll software that gives you the power to handle all the payroll processing you need, from modeling an employee’s paycheck to tracking deductions and taxes. Whether you need a few employees or thousands, QuickBooks ...

Pricing

Free Trial available, Try Now

Starts from $49/Month

9.2

Spot Score

SurePayroll

Efficiency meets accuracy in one payroll solution.

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4.0

(1364)

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Product Description

SurePayroll is a cloud-based, Payroll Software with Time Tracking Service. The software can be accessed from any device and is hosted by SurePayroll in the Amazon Web Services (AWS) data center for fast processing and performance.It automates most employee related tasks including accurate and ...

Pricing

Free Trial available

SurePayroll offers custom pricing plan

9.1

Spot Score

greytHR

Streamline payroll management, anytime, anywhere.

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4.1

(353)

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Product Description

greytHR is a web-based HR software that allows multiple firms to share and manage payrolls in one place. You can access your payroll information from anywhere, anytime using a PC or Smartphone and reduce your costs by avoiding duplicate work and paying for only what you need.

Pricing

Free Trial available, Try Now

Starts from $3495/month, also offers free forever plan

8.9

Spot Score

ThePayStubs

Effortlessly manage your payroll with ThePayStubs.

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Product Description

ThePayStubs is the best way to quickly generate online pay stubs. Instantly print or access pay stubs to help keep track of salary, taxes, and overtime pay. Get all the info you need about your earnings and deductions with this simple, fast and secure check stub creator. Enjoy stress-free ...

Pricing

ThePayStubs offers custom pricing plan

8.8

Spot Score

Patriot Payroll

Efficiently streamline your payroll process.

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4.7

(3070)

Add to compare

Product Description

The Patriot's secure payroll solution is designed to lower the total cost of payroll administration, while helping you reduce your staffs' workload. With its fully integrated interface with Patriot's fund accounting and other core compliance solutions, Patriot Payroll Software automates the ...

Pricing

Free Trial available, Try Now

Starts from $14/Month

8.8

Spot Score

Square Payroll

Streamline your payroll with ease.

Request a Quote

3.9

Add to compare

Product Description

Square Payroll is our new, easy-to-use payroll software that integrates with your existing payroll provider. It helps you pay employees faster, keep better track of hours worked, and outsource the labor-intensive parts of running a business.

Pricing

Free Trial available, Try Now

Starts from $34/User/Month

8.7

Spot Score

Papaya Global

Global payroll made simple.

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4.6

(34)

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Product Description

Papaya Global is a cloud-based payroll management software designed for multinational businesses. It offers a variety of essential features such as data security, cost breakdown analysis, records management, and benefits administration. This integrative platform allows businesses to streamline ...

Pricing

Starts from $20/User/Month

8.7

Spot Score

APS Payroll

Efficient payroll management, with precision and security.

Request a Quote

4.6

(352)

Add to compare

Product Description

APS Payroll provides the functionality, precision, and security you need to help you manage your payroll. It is an easy-to-use yet robust system that meets the needs of even the most complex organizations while delivering accurate and secure paychecks in a timely manner.

Pricing

APS Payroll offers custom pricing plan

8.7

Spot Score

Microkeeper

Efficiency meets affordability - simplify your payroll process.

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4.5

(90)

Add to compare

Product Description

Microkeeper is a user-friendly payroll software that connects you with the world of business payroll processing: delivering quick online setup, automated time keeping and more. Payroll processing has never been easier or more affordable. Microkeeper gives you simplicity and convenience in ...

Pricing

Free Trial available, Try Now

Starts from $2.25/User/Month, also offers free forever plan

8.7

Spot Score

Fingercheck

Effortless payroll management with a swipe.

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4.3

(163)

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Product Description

The FingerCheck payroll software does everything the other payroll programs do but with a finger swipe. Timesheets, employee punch times and attendance reports are just a few of the functions offered by FingerCheck payroll software. Attempting to enter information while on the move works ...

Pricing

Free Trial available, Try Now

Starts from $23/Month

8.7

Spot Score

WavePayroll

Effortless payroll and invoicing at your fingertips.

Request a Quote

4.2

(30)

Add to compare

Product Description

Introducing WavePayroll, a comprehensive payroll management platform designed to give you peace of mind while managing your company. With an easy-to-use dashboard, you can track your earnings, spending, payments, and invoices effortlessly. Our customizable invoicing software not only saves you ...

Pricing

8.7

Spot Score

Heartland Payroll

Efficient payroll management made easy.

Request a Quote

3.8

(120)

Add to compare

Product Description

Heartland Payroll is a payroll management software for small and medium sized companies. It handles all your payroll processing requirements such as bi-weekly, monthly or yearly paychecks, cost accounting and tracking of leave balances. The system has complete comprehensive accounting module ...

Pricing

Heartland Payroll offers custom pricing plan

Best Payroll Software For Small Business

Paychex FlexRECOMMENDED

Streamline your payroll with ease.

Paychex Flex is a cloud-based payroll software for mid- to large-sized employers, delivering the tools you need to run your business and support your people. This payroll system provides everything you need in just one simple package. It includes: W-2 and 1099 printing, Payroll processing, ...

Paycom

Efficient payroll made simple.

Paycom is the fastest and most user-friendly payroll software out there. With Paycom, you can run payroll online or download to use on your own computer. Pay employees by check, direct deposit in one easy step. Track pay and deductions all in one place to reduce errors and maximize compliance. ...

Gusto

Modern HR for Growing Businesses

Gusto is a comprehensive HR platform designed to help businesses of all sizes thrive. Whether you’re just starting out or scaling rapidly, Gusto provides the tools and guidance you need to grow and nurture your team. Trusted by over 300,000 businesses across the U.S., Gusto combines payroll, ...

Zenefits

Streamline payroll and stay compliant with ease.

Zenefits Payroll handles all your company's payroll needs. The software is automatically updated with payroll tax tables, so there's no need for you to manually file quarterly updates. Zenefits helps you manage employees, and ensure you're compliant with all applicable payroll laws.

OnPay

Streamline your payroll process and save time and money.

OnPay is an intuitive online payroll software designed to meet the needs of supervisors, managers, payroll specialists and people who manage pay for hourly or salaried staff. OnPay helps companies of all sizes reduce costs for processing payroll checks, making tax reports, tracking down pay ...

Remote.com

Effortlessly manage your remote workforce.

Remote.com is a remote work management platform that simplifies global payroll, compliance, and workforce administration for businesses of all sizes. It seamlessly integrates with HR systems, centralizing payroll data for security and accuracy. The platform enables effortless onboarding with ...

factoHR

Streamline HR management and focus on growth.

FactoHR is a mobile-first, fully integrated HCM platform designed to empower businesses in building a high-performing workforce while streamlining HR operations. The solution offers a feature-rich mobile app, enabling employees to access their data and perform HR tasks anytime, anywhere, ...

Justworks

Efficient payroll management on the go.

Justworks is payroll software that offers international payroll, payroll tax filing and realtime benefits administration. The Justworks app is a simple way for teams to bill their hours directly from their iPhone or Android devices. This mobile solution provides employees with a transparent ...

QuickBooks Payroll

Streamline your payroll process with ease.

QuickBooks Payroll makes it easy to stay on top of your HR needs. It’s payroll software that gives you the power to handle all the payroll processing you need, from modeling an employee’s paycheck to tracking deductions and taxes. Whether you need a few employees or thousands, QuickBooks ...

SurePayroll

Efficiency meets accuracy in one payroll solution.

SurePayroll is a cloud-based, Payroll Software with Time Tracking Service. The software can be accessed from any device and is hosted by SurePayroll in the Amazon Web Services (AWS) data center for fast processing and performance.It automates most employee related tasks including accurate and ...

greytHR

Streamline payroll management, anytime, anywhere.

greytHR is a web-based HR software that allows multiple firms to share and manage payrolls in one place. You can access your payroll information from anywhere, anytime using a PC or Smartphone and reduce your costs by avoiding duplicate work and paying for only what you need.

ThePayStubs

Effortlessly manage your payroll with ThePayStubs.

ThePayStubs is the best way to quickly generate online pay stubs. Instantly print or access pay stubs to help keep track of salary, taxes, and overtime pay. Get all the info you need about your earnings and deductions with this simple, fast and secure check stub creator. Enjoy stress-free ...

Patriot Payroll

Efficiently streamline your payroll process.

The Patriot's secure payroll solution is designed to lower the total cost of payroll administration, while helping you reduce your staffs' workload. With its fully integrated interface with Patriot's fund accounting and other core compliance solutions, Patriot Payroll Software automates the ...

Square Payroll

Streamline your payroll with ease.

Square Payroll is our new, easy-to-use payroll software that integrates with your existing payroll provider. It helps you pay employees faster, keep better track of hours worked, and outsource the labor-intensive parts of running a business.

Papaya Global

Global payroll made simple.

Papaya Global is a cloud-based payroll management software designed for multinational businesses. It offers a variety of essential features such as data security, cost breakdown analysis, records management, and benefits administration. This integrative platform allows businesses to streamline ...

APS Payroll

Efficient payroll management, with precision and security.

APS Payroll provides the functionality, precision, and security you need to help you manage your payroll. It is an easy-to-use yet robust system that meets the needs of even the most complex organizations while delivering accurate and secure paychecks in a timely manner.

Microkeeper

Efficiency meets affordability - simplify your payroll process.

Microkeeper is a user-friendly payroll software that connects you with the world of business payroll processing: delivering quick online setup, automated time keeping and more. Payroll processing has never been easier or more affordable. Microkeeper gives you simplicity and convenience in ...

Fingercheck

Effortless payroll management with a swipe.

The FingerCheck payroll software does everything the other payroll programs do but with a finger swipe. Timesheets, employee punch times and attendance reports are just a few of the functions offered by FingerCheck payroll software. Attempting to enter information while on the move works ...

WavePayroll

Effortless payroll and invoicing at your fingertips.

Introducing WavePayroll, a comprehensive payroll management platform designed to give you peace of mind while managing your company. With an easy-to-use dashboard, you can track your earnings, spending, payments, and invoices effortlessly. Our customizable invoicing software not only saves you ...

Heartland Payroll

Efficient payroll management made easy.

Heartland Payroll is a payroll management software for small and medium sized companies. It handles all your payroll processing requirements such as bi-weekly, monthly or yearly paychecks, cost accounting and tracking of leave balances. The system has complete comprehensive accounting module ...

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Frequently Asked Questions (FAQs)

Paychex Flex
RECOMMENDED