Top 10 WavePayroll Alternatives 2026

What reviewers like about EPAY HCM

• Exceptional customer support, available 24/7, ensuring quick and effective troubleshooting.
• User-friendly interface with simple navigation, both on the mobile app and website.
• Efficient time tracking features allowing easy access, editing, and management of employee attendance and payroll.

Where EPAY HCM falls short

• Occasional complexity with certain features, like adding mass PTO with different hour allocations for part-time vs. full-time employees, creating additional work.
• Fingerprint mismatches causing errors in payroll, especially with certain employees, despite re-registering fingerprints.
• Issues with login reliability, such as cases where users struggle to access accounts due to password or keyboard settings.

What reviewers like about APS Payroll

• Integration with Sage Intacct simplifies operations and reduces manual work.
• Extremely user-friendly, with clear features for both admins and employees.
• Excellent customer service with responsive, knowledgeable, and dedicated support teams.

Where APS Payroll falls short

• Implementation can be disorganized with some inconsistencies and delays in setup or onboarding.
• Customization is limited in certain features like deduction fields, reporting, and benefits management.
• Reporting features can be challenging for new users until they gain familiarity with the system.

What reviewers like about Pilot

• Extremely easy to set up and onboard, with a user-friendly interface and clear instructions.
• Quick and reliable payment processing, ensuring users receive funds promptly.
• Supports international and cross-currency transactions, offering competitive exchange rates and transparent fees.

Where Pilot falls short

• Occasional issues with local banking systems that may cause delays in receiving international payments.
• Limited advanced features or integrations for businesses seeking more customization and scalability.
• Some users express dissatisfaction with exchange rates, suggesting room for improvement despite competitive pricing.

What reviewers like about OnPay

• OnPay stands out for its intuitive design, making it easy for supervisors, managers, and payroll specialists to navigate and execute payroll tasks efficiently
• It supports both hourly and salaried employees, allowing companies to manage diverse workforce needs under one system.
• By automating key payroll functions, OnPay helps organizations cut down on the time and expenses typically involved in payroll operations.

Where OnPay falls short

• While great for SMBs, larger companies might find customization options less robust for complex payroll needs.
• OnPay focuses on payroll and may require additional tools for functions like recruitment or performance management.
• As a cloud-based solution, internet connectivity is required, which might be a constraint in certain environments.

What reviewers like about Fingercheck

• Centralizes payroll, time tracking, and attendance in a single platform, making processes more efficient and error-free.
• Easy-to-use interface and mobile app allow employees and administrators to navigate and complete tasks with ease.
• Reporting features generate valuable insights on payroll, labor movement, and cost management.

Where Fingercheck falls short

• User interface for complex features can be challenging for some without customer support guidance.
• Occasional system slowdowns and delays when generating reports or loading locations.
• Limited flexibility in building customizable reports and specific features like benefit administration.

What reviewers like about Square Payroll

• Square Payroll integrates effortlessly with existing payroll providers, making it an ideal plug-and-play solution without the need for major system overhauls.
• Its simple and intuitive design makes payroll management easy even for business owners or HR teams with limited technical expertise.
• Built-in time tracking allows accurate logging of hours worked, which improves payroll precision and reduces manual errors.

Where Square Payroll falls short

• While great for small businesses, it may lack some of the advanced reporting, analytics, or customization features needed by larger enterprises.
• Full functionality may be best realized when used within the broader Square ecosystem, limiting flexibility for companies using other systems.
• Businesses with multiple locations, international staff, or intricate pay structures might find the platform’s simplicity somewhat restrictive.

What reviewers like about CloudPay

• Payroll data is accessible from any device, supporting remote teams.
• Clear layout and navigation work for non-technical users.
• Payroll is processed accurately and on schedule.

Where CloudPay falls short

• Reporting lacks the depth found in enterprise-level platforms.
• Full cloud dependency means connectivity outages or downtime can block access to payroll data.

What reviewers like about Microkeeper

• Consolidates payroll, rosters, timesheets, and HR tasks into one platform.
• Does not require extensive training to get started.
• Automates payroll processing and other repetitive administrative tasks, saving time.

Where Microkeeper falls short

• Occasional app or feature downtime causes minor disruptions.
• Superannuation or payslip summary updates sometimes lack clarity or employee-facing visibility.
• App design and layout are considered less modern by some users.

What reviewers like about QuickBooks Payroll

• Automates tax filing, paycheck generation, and sends real-time notifications to reduce manual effort.
• Interface includes step-by-step tutorials and works for both beginners and experienced users.
• Integrates with QuickBooks for financial reporting and analytics.

Where QuickBooks Payroll falls short

• Steeper pricing compared to alternative payroll systems, especially for smaller businesses or limited payroll needs.
• Complexity in resolving reporting errors or adjusting liabilities, often requiring external support or advanced accounting knowledge.
• Occasional glitches, lag, and freezes, especially with the online version, impacting usability and efficiency.

What reviewers like about Papaya Global

• Handles global payroll processing and hiring across multiple countries with local compliance.
• Centralized interface for managing payroll with an accessible platform.
• Dedicated payroll specialists and Customer Success Managers provide responsive support.

Where Papaya Global falls short

• Invoices often lack detail, making it hard to associate charges with specific employees.
• Bulk updates to employee data require manual processes or specific file requests.
• PTO imports and certain technical features need improvement.