8.1
SpotScore
Top 10 HR3 Payroll Alternatives 2026
Streamline your payroll process with ease.
Trusted by 2M+ software buyers annually.
Main Features
- Attendance Tracking
- Benefits Management
- Direct Deposit
- Leave Tracking (Vacation)
Pricing
HR3 Payroll offers custom pricing plan
HR3 Payroll is a Payroll Software platform. Teams looking for alternatives typically need better pricing flexibility, easier deployment, or a closer feature fit for their specific use case. Below you'll find 10 vetted Payroll Software alternatives ranked by user rating, with filters to narrow by pricing, platform, and features — so you can find the right fit for 2026.
HR3 Payroll vs Top Alternatives at a Glance
Side-by-side comparison of pricing, user rating, and free trial availability to help you decide faster.
| Tool | Best For | Pricing | Rating | Free Option |
|---|---|---|---|---|
| HR3 Payroll Current | Payroll Software | Custom pricing | No reviews | ✗ No |
 JustLogin | Payroll Software | Custom pricing | 3.8 ★ | ✗ No |
 Microkeeper | Payroll Software | $2.25 | 4.7 ★ | ✓ Yes |
 Paybooks | Payroll Software | Free trial | 5.0 ★ | ✓ Yes |
 Wagepoint | Payroll Software | $22 | 4.7 ★ | ✗ No |
 Square Payroll | Payroll Software | $34 | 5.0 ★ | ✓ Yes |
Showing 1-10 out of 10
List of the Top HR3 Payroll alternatives as of September 2026
Compare business software, products, and services to find the best solution for your business or organization. Use the filters on the left to drill down by category, pricing, features, market segment, user ratings, and more.
7.9
SpotScore
JustLogin
Empowering businesses. Engaging employees.
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What is JustLogin?
JustLogin is an employee-centred HR software provider in Southeast Asia that offers a comprehensive selection of HR and office applications to suit the needs of the globally connected business community. From IKEA to Nippon Airways to Inside Scoop, a variety of renowned businesses across ...
Read moreCommon Features
-
Leave Tracking (Vacation)
-
Self Service Portal
-
Multi-country
+ 3 more
Unique Features
No unique features
Pricing
JustLogin offers custom pricing plan
8.7
SpotScore
Microkeeper
Efficiency meets affordability - simplify your payroll process.
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What is Microkeeper?
Microkeeper is a user-friendly payroll software that connects you with the world of business payroll processing: delivering quick online setup, automated time keeping and more. Payroll processing has never been easier or more affordable. Microkeeper gives you simplicity and convenience in ...
Read moreCommon Features
-
Wage Garnishment
-
Leave Tracking (Vacation)
-
Self Service Portal
+ 4 more
Unique Features
-
Deductions Management
-
Check Printing
Pricing
Free Trial available, Try Now
Starts from $2.25/User/Month, also offers free forever plan
Spotsaas Buyer Intelligence
Own the software buyers are comparing here? See who's weighing you against rivals — and who's comparing your competitors while you're not in the running.
8.5
SpotScore
Paybooks
Effortlessly manage payroll with Paybooks.
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What is Paybooks?
Paybooks is payroll software for HR teams in mid-sized to large companies managing payroll across multiple business units or tax jurisdictions. It handles salary calculation, statutory compliance, and supports both cloud and on-premise deployment depending on IT policy. Setup requires ...
Read moreCommon Features
-
Leave Tracking (Vacation)
-
Self Service Portal
-
Direct Deposit
+ 3 more
Unique Features
-
Deductions Management
Pricing
Free Trial available, Try Now
Paybooks offers custom pricing plan
8.3
SpotScore
Wagepoint
Efficient payroll, simplified.
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What is Wagepoint?
Wagepoint is payroll software for small and medium-sized businesses in Canada and the US, with particular depth in handling CRA tax filings, government remittances, and Canadian compliance requirements. It automates payroll runs, direct deposits, and tax submissions, and provides a self-service ...
Read moreCommon Features
-
Wage Garnishment
-
Self Service Portal
-
Multi-country
+ 2 more
Unique Features
No unique features
Pricing
Starts from $22/Month
8.8
SpotScore
Square Payroll
Streamline your payroll with ease.
Add to compare
What is Square Payroll?
Square Payroll is payroll software for small businesses and sole proprietors, particularly those already running payments or point-of-sale through Square's ecosystem. It automates pay runs, tax filings, and direct deposit, and pulls time tracking data directly from Square tools to eliminate ...
Read moreCommon Features
-
Wage Garnishment
-
Leave Tracking (Vacation)
-
Self Service Portal
+ 5 more
Unique Features
-
W-2 Preparation
-
Deductions Management
-
Compensation Management
+ 2 more
Pricing
Free Trial available, Try Now
Starts from $34/User/Month
8.7
SpotScore
APS Payroll
Efficient payroll management, with precision and security.
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What is APS Payroll?
APS Payroll is a payroll and HR management platform for mid-sized businesses that need customizable reporting, employee self-service, and third-party integrations alongside core payroll processing. Its report builder lets HR teams generate custom outputs for workforce cost analysis without ...
Read moreCommon Features
-
Wage Garnishment
-
Leave Tracking (Vacation)
-
Self Service Portal
+ 4 more
Unique Features
-
W-2 Preparation
-
Deductions Management
-
Compensation Management
+ 2 more
Pricing
APS Payroll offers custom pricing plan
9.2
SpotScore
QuickBooks Payroll
Streamline your payroll process with ease.
Add to compare
What is QuickBooks Payroll?
QuickBooks Payroll makes it easy to stay on top of your HR needs. It’s payroll software that gives you the power to handle all the payroll processing you need, from modeling an employee’s paycheck to tracking deductions and taxes. Whether you need a few employees or thousands, QuickBooks ...
Read moreCommon Features
-
Wage Garnishment
-
Leave Tracking (Vacation)
-
Self Service Portal
+ 4 more
Unique Features
-
W-2 Preparation
-
Deductions Management
-
Compensation Management
+ 2 more
Pricing
Free Trial available, Try Now
Starts from $49/Month
7.9
SpotScore
Pilot
Streamline your business with expert payroll management.
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What is Pilot?
Pilot offers companies with remote and distributed teams an effortless solution for payroll, compliance, and benefits. With the help of a knowledgeable expert and a dedicated account manager, you can leave bookkeeping and paperwork to the professionals, and redirect your attention to what ...
Read moreCommon Features
-
Self Service Portal
-
Multi-country
-
Benefits Management
+ 1 more
Unique Features
No unique features
Pricing
Starts from $29
7.6
SpotScore
ADP Payroll Services
Efficient HR solutions at your fingertips.
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What is ADP Payroll Services?
ADP Payroll Services offers a comprehensive suite of tools designed to help businesses of all sizes comply with payroll, taxes, and other HR regulations. The latest tools from ADP provide access to a live HR support team, a job description wizard, employee handbook guidelines, proactive ...
Read moreCommon Features
-
Multi-country
-
Direct Deposit
-
Benefits Management
+ 2 more
Unique Features
-
W-2 Preparation
-
Check Printing
Pricing
Free Trial available, Try Now
ADP Payroll Services offers custom pricing plan
8.6
SpotScore
PrimePay
Streamline your payroll with ease.
Add to compare
What is PrimePay?
PrimePay is payroll software that offers a full payroll for small and mid-sized businesses. It is designed to be simple and easy to use, while maintaining the requirements needed for a company's payroll. Both new companies just starting on Payroll and companies already on Payroll will benefit ...
Read moreCommon Features
-
Wage Garnishment
-
Self Service Portal
-
Direct Deposit
+ 2 more
Unique Features
-
W-2 Preparation
-
Check Printing
-
401(k) Tracking
Pricing
PrimePay offers custom pricing plan
Which HR3 Payroll Alternative Is Right for You?
- If you need a free or low-cost option: Microkeeper — offers a free plan or trial suitable for small teams.
- If user satisfaction is your top priority: Paybooks — holds the highest user rating (5.0★) among HR3 Payroll alternatives.
- If you want a mid-range option: APS Payroll — sits in the middle of the list by rating and may fit teams with mixed requirements.
Free switching kit
Switching from HR3 Payroll? Get the migration checklist
A step-by-step payroll software migration checklist so you can move off HR3 Payroll without losing data or momentum.
- Pre-switch data & access audit
- Migration timeline and owners
- Go-live cutover checklist
No file downloads on screen — we email it to you. One-click unsubscribe anytime.
Frequently Asked Questions (FAQs)
Stuck on something? We're here to help with all the questions and answers in one place.
The top-rated alternatives to HR3 Payroll for Payroll Software are Paybooks (5.0★), Square Payroll (5.0★), Pilot (4.8★). Compare all 10 alternatives side-by-side above.
When evaluating alternatives to HR3 Payroll, prioritize: Tax Management, Attendance Tracking, Benefits Management, Direct Deposit, Multi-country, transparent pricing, free trial availability, and integrations with tools you already use. Use the filters above to compare by feature, budget, and team size.
For small businesses, the best Payroll Software tools are Paycom, BambooHR, Gusto. Look for affordable per-seat pricing, quick setup (under 1 day), no long-term contracts, and strong onboarding support to reduce time-to-value.
Migration difficulty depends on how deeply HR3 Payroll is integrated into your workflows. Most alternatives offer data export/import tools and dedicated onboarding support. We recommend narrowing to 2–3 options, running a free trial, and checking each vendor's migration guides before committing.
About the reviewer
Rajat Gupta is the founder of Spotsaas. Over the past two years, he has reviewed 2,000+ tools across CRM, HR, AI, and finance — applying hands-on product research and a background in commerce and the CFA program to evaluate software through a business and ROI lens. His goal: help teams make software decisions they won't regret.
Disclaimer: This research has been collated from a variety of authoritative sources. We welcome your feedback at [email protected].