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Top 12 Free HR3 Payroll Alternatives, Compared (2026)

Explore 12 alternatives to HR3 Payroll — vetted by our editors with real user reviews, pricing, and feature comparisons.

HR3 Payroll alternatives: our 12 top picks at a glance

Quick answer

The best free payroll software tools to replace HR3 Payroll are Justworks, KeyPay and Patriot Payroll. Justworks sits at number one with a SpotScore of 9.2 and 3.9★ from reviewers. Compare all 12 on score, rating, and pricing below.

Some teams leave HR3 Payroll for the price, others for features or fit. Whatever yours is, these 12 payroll software free alternatives are the picks we'd start with, ranked by SpotScore (real-user satisfaction plus market presence), ratings, and pricing. Editors review each. The table is your quick comparison; the sections below add depth.

ProductSpotScoreRatingPricingBest for
JustworksEfficient payroll management on the go.9.2★★★★ 3.9(50)Freefrom $8 /user/monthteams of all sizes
KeyPayEffortless payroll management at your fingertips.8Not yet ratedFreeFree Trial · Subscription · Quotation Basedteams of all sizes
Patriot PayrollEfficiently streamline your payroll process.8.8★★★★★ 4.88(3151)FreeFree Trial · Subscriptionteams of all sizes
PaycorTransform your workforce with Paycor.9.6★★★★ 3.74(552)FreeFree Trial · Quotation Basedteams of all sizes
BambooHRStreamline your HR processes for better business results.9.8★★★★★ 4.75(1093)FreeFree Trial · Quotation Basedteams of all sizes
GustoModern HR for Growing Businesses9.7★★★★ 4.36(947)FreeFree Trial · Subscription · Quotation Basedsmall & mid-size businesses
HomebaseStreamline team collaboration with Homebase.9.7★★★★ 4.41(131)FreeFree Trial · Freemium · Subscriptionteams of all sizes
ZenefitsStreamline payroll and stay compliant with ease.9.5★★★★ 4.1(545)FreeFree Trial · Subscription · Quotation Basedsmall & mid-size businesses
OnPayStreamline your payroll process and save time and money.9.4★★★★★ 4.95(447)FreeFree Trial · Subscriptionteams of all sizes
factoHRStreamline HR management and focus on growth.9.3★★★★★ 4.5(10)FreeFree Trial · Quotation Basedteams of all sizes
QuickBooks PayrollStreamline your payroll process with ease.9.2★★★★ 4.32(56)FreeFree Trial · Subscriptionsmall businesses
SurePayrollEfficiency meets accuracy in one payroll solution.9.2★★★★★ 4.83(1436)FreeFree Trial · Quotation Basedteams of all sizes

9.2

SpotScore

Justworks - Payroll Software

Justworks

Efficient payroll management on the go.

Best for: SMB teams · Mid-market · Enterprise

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What is Justworks?

Justworks is payroll software that offers international payroll, payroll tax filing and realtime benefits administration. The Justworks app is a simple way for teams to bill their hours directly from their iPhone or Android devices. This mobile solution provides employees with a transparent ...

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Free TrialTry Free →

8.0

SpotScore

KeyPay

KeyPay

Effortless payroll management at your fingertips.

Best for: SMB teams · Mid-market · Enterprise

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What is KeyPay?

KeyPay is our payroll software which can produce and print your time sheets with just one click. It produces payroll checks fully integrated with our database. It is also user-friendly, intuitive, reliable, affordable and fast. KeyPay is so easy to use that it eliminates the need for expensive ...

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Free TrialTry Free →·

KeyPay offers custom pricing plan

8.8

SpotScore

Patriot Payroll - Payroll Software

Patriot Payroll

Editor’s Pick

Efficiently streamline your payroll process.

Best for: SMB teams · Mid-market · Enterprise

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What is Patriot Payroll?

The Patriot's secure payroll solution is designed to lower the total cost of payroll administration, while helping you reduce your staffs' workload. With its fully integrated interface with Patriot's fund accounting and other core compliance solutions, Patriot Payroll Software automates the ...

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Free TrialTry Free →·

Starts from $14/Month

9.6

SpotScore

Paycor - HR Software

Paycor

Recommended

Transform your workforce with Paycor.

Best for: SMB teams · Mid-market · Enterprise

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What is Paycor?

Paycor is a human capital management platform for mid-size businesses and nonprofits that need payroll processing, time tracking, benefits administration, and employee onboarding managed in a single system. It eliminates the need for separate payroll and HR tools by centralizing people ...

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Paycor offers custom pricing plan

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9.8

SpotScore

BambooHR - HR Software

BambooHR

Streamline your HR processes for better business results.

Best for: SMB teams · Mid-market · Enterprise

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What is BambooHR?

BambooHR is an HR platform built for small and mid-sized businesses — typically 10 to 500 employees — covering employee records, onboarding, time-off tracking, and performance management in one system. It replaces fragmented spreadsheets and disconnected tools by centralizing all employee data ...

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Free TrialTry Free →·

BambooHR offers custom pricing plan

9.7

SpotScore

Gusto - Payroll Software

Gusto

Modern HR for Growing Businesses

Best for: SMB teams · Mid-market

HIPAA
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What is Gusto?

Gusto is a comprehensive HR platform designed to help businesses of all sizes thrive. Whether you’re just starting out or scaling rapidly, Gusto provides the tools and guidance you need to grow and nurture your team. Trusted by over 300,000 businesses across the U.S., Gusto combines payroll, ...

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Free TrialTry Free →·

Starts from $49/user/month when monthly

9.7

SpotScore

Homebase - Employee Scheduling Software

Homebase

Streamline team collaboration with Homebase.

Best for: SMB teams · Mid-market · Enterprise

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What is Homebase?

Homebase is a comprehensive time-tracking software developed by experienced people managers to enhance team collaboration and efficiency. It simplifies employee time tracking, scheduling, and payroll management, reducing administrative workload. The platform allows users to generate insightful ...

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Free TrialTry Free →·

Starts from $0/ location / month when monthly, also offers free forever plan

9.5

SpotScore

Zenefits - Payroll Software

Zenefits

Streamline payroll and stay compliant with ease.

Best for: SMB teams · Mid-market

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What is Zenefits?

Zenefits is an all-in-one HR, payroll, and benefits administration platform for growing companies that want to consolidate onboarding, time-off tracking, payroll processing, and compliance management in a single system. It eliminates the common pattern of using separate tools for HR records, ...

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Zenefits offers custom pricing plan

9.4

SpotScore

OnPay - Payroll Software

OnPay

Streamline your payroll process and save time and money.

Best for: SMB teams · Mid-market · Enterprise

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What is OnPay?

OnPay is an intuitive online payroll software designed to meet the needs of supervisors, managers, payroll specialists and people who manage pay for hourly or salaried staff. OnPay helps companies of all sizes reduce costs for processing payroll checks, making tax reports, tracking down pay ...

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Free TrialTry Free →·

Starts from $40/Month

9.3

SpotScore

factoHR - HR Software

factoHR

Streamline HR management and focus on growth.

Best for: SMB teams · Mid-market · Enterprise

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What is factoHR?

FactoHR is a mobile-first, fully integrated HCM platform designed to empower businesses in building a high-performing workforce while streamlining HR operations. The solution offers a feature-rich mobile app, enabling employees to access their data and perform HR tasks anytime, anywhere, ...

Read more about factoHR
Free TrialTry Free →·

factoHR offers custom pricing plan

9.2

SpotScore

QuickBooks Payroll - Payroll Software

QuickBooks Payroll

Streamline your payroll process with ease.

Best for: SMB teams

Start Free Trial

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What is QuickBooks Payroll?

QuickBooks Payroll makes it easy to stay on top of your HR needs. It’s payroll software that gives you the power to handle all the payroll processing you need, from modeling an employee’s paycheck to tracking deductions and taxes. Whether you need a few employees or thousands, QuickBooks ...

Read more about QuickBooks Payroll
Free TrialTry Free →·

Starts from $49/Month

9.2

SpotScore

SurePayroll - Payroll Software

SurePayroll

Efficiency meets accuracy in one payroll solution.

Best for: SMB teams · Mid-market · Enterprise

Start Free Trial

Add to compare

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What is SurePayroll?

SurePayroll is a cloud-based, Payroll Software with Time Tracking Service. The software can be accessed from any device and is hosted by SurePayroll in the Amazon Web Services (AWS) data center for fast processing and performance.It automates most employee related tasks including accurate and ...

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Free Trial·

SurePayroll offers custom pricing plan

What earned each one a spot

Justworks9.2Best for teams of all sizes

International payroll capabilities

Watch for: Higher cost for small businesses

KeyPay8Best for teams of all sizes

KeyPay streamlines payroll by enabling users to produce and print timesheets with a single click, significantly reducing administrative effort.

Watch for: It’s unclear whether the platform includes comprehensive payroll analytics or customizable reporting tools beyond timesheets and paychecks.

Patriot Payroll8.8Best for teams of all sizes

Very user-friendly software, making tasks straightforward and efficient for startups and small businesses.

Watch for: Occasional learning curve during setup or for newcomers, though consistently offset by good support.

Paycor9.6Best for teams of all sizes

Covers payroll, recruiting, onboarding, performance management, and benefits administration in one platform.

Watch for: Customer service response times are consistently slow, with no assigned representatives and frequent case mismanagement.

BambooHR9.8Best for teams of all sizes

Automates HR processes including document signing, onboarding, and payroll.

Watch for: Lacks advanced features found in more comprehensive HRIS platforms.

Gusto9.7Best for small & mid-size businesses

Handles payroll processing and tax compliance without requiring accounting expertise.

Watch for: Occasional reports of errors in support communication or inconsistencies in handling complex account issues.

Homebase9.7Best for teams of all sizes

Streamlines scheduling processes, making it easy to set and manage employee schedules.

Watch for: Limited customization options in the free version, with some advanced functionalities restricted.

Zenefits9.5Best for small & mid-size businesses

Handles onboarding, offboarding, payroll, and benefits administration in one workflow, reducing paperwork.

Watch for: Customer support response times are slow, with limited availability during urgent situations.

OnPay9.4Best for teams of all sizes

OnPay stands out for its intuitive design, making it easy for supervisors, managers, and payroll specialists to navigate and execute payroll tasks efficiently

Watch for: While great for SMBs, larger companies might find customization options less robust for complex payroll needs.

factoHR9.3Best for teams of all sizes

Simplifies payroll and attendance management with features like punch in/out tracking and automated calculations.

Watch for: Limited mention of advanced or specialized features may reflect a lack of versatility for larger or complex organizations.

QuickBooks Payroll9.2Best for small businesses

Automates tax filing, paycheck generation, and sends real-time notifications to reduce manual effort.

Watch for: Steeper pricing compared to alternative payroll systems, especially for smaller businesses or limited payroll needs.

SurePayroll9.2Best for teams of all sizes

Payroll setup is quick, easy to use, and simplifies previously cumbersome tasks like tax deductions and filings.

Watch for: Occasional issues with missing payments or discrepancies that require follow-up.

Why teams look for a HR3 Payroll alternative

Switching away from HR3 Payroll is usually triggered by one or more of these sticking points:

  • While basic operations are simple, advanced features may require training.
  • The user interface could benefit from a modern refresh to match today's design standards.
  • Some users may experience delays in support response during peak periods.

What to look for in a HR3 Payroll alternative

The hard numbers across these 12 payroll software free alternatives: 12 offer a free tier; paid plans run $8, with Justworks the cheapest entry point; and OnPay is the highest rated at 4.95 across 447 reviews.

Behind the ranking.

Frequently Asked Questions (FAQs)

Stuck on something? We're here to help with all the questions and answers in one place.

The top-rated alternatives to HR3 Payroll are OnPay (5.0★), Patriot Payroll (4.9★), SurePayroll (4.8★). Compare all 12 alternatives side-by-side above.

When evaluating alternatives to HR3 Payroll, prioritize: Tax Management, Attendance Tracking, Benefits Management, Direct Deposit, Multi-country, transparent pricing, free trial availability, and integrations with your existing tools. Use the filters above to compare by feature, budget, and team size.

Migration difficulty depends on how deeply HR3 Payroll is integrated into your workflows. Most alternatives offer data export/import tools and dedicated onboarding support. We recommend shortlisting 2–3 options, running a free trial, and checking each vendor's migration guides before committing.

Which HR3 Payroll alternative fits your needs?

  • On a budget / just exploring: start with a free tier — Justworks, KeyPay and Patriot Payroll let you evaluate without paying upfront.
  • If real-user ratings matter most: OnPay has the strongest star rating (4.95★) among the options with verified reviews.
  • Want the safest pick: Justworks has the highest Spotsaas Score (9.2) in this list — a strong default if you're unsure.

Leaving HR3 Payroll behind

Planning your exit from HR3 Payroll? Pull your data out first and confirm the replacement imports it without loss. Make sure the workflows you depend on are covered, run a short trial before committing, and keep HR3 Payroll live as a fallback until you're settled. Many tools here offer a free path to test.

Disclaimer: This research has been collated from a variety of authoritative sources. We welcome your feedback at [email protected].