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HR3 Payroll Alternatives: 12 Options Compared, Including Free (2026)

Explore 12 alternatives to HR3 Payroll — vetted by our editors with real user reviews, pricing, and feature comparisons.

HR3 Payroll alternatives: our 12 top picks at a glance

Quick answer

The best free payroll software tools to replace HR3 Payroll are QuickBooks Payroll, Square Payroll and Microkeeper. QuickBooks Payroll sits at number one with a SpotScore of 9.2 and 4.4★ from reviewers. Compare all 12 on score, rating, and pricing below.

Some teams leave HR3 Payroll for the price, others for features or fit. Whatever yours is, these 12 payroll software free alternatives are the picks we'd start with, ranked by SpotScore (real-user satisfaction plus market presence), ratings, and pricing. Editors review each. The table is your quick comparison; the sections below add depth.

ProductSpotScoreRatingPricingBest for
QuickBooks PayrollStreamline your payroll process with ease.9.2★★★★ 4.4(56)Freefrom $49/mosmall businesses
Square PayrollStreamline your payroll with ease.8.8★★★★★ 5(15)Freefrom $34 /User/Monthteams of all sizes
MicrokeeperEfficiency meets affordability - simplify your payroll process.8.7★★★★★ 4.69(90)Freefrom $2.25 /User/Monthteams of all sizes
PaybooksEffortlessly manage payroll with Paybooks.8.5★★★★★ 5(3)FreeFree Trial · Quotation Based · Subscriptionteams of all sizes
ADP Payroll ServicesEfficient HR solutions at your fingertips.7.6★★★★ 4.3(226)FreeFree Trial · Quotation Basedteams of all sizes
BambooHRStreamline your HR processes for better business results.9.8★★★★★ 4.74(1093)FreeFree Trial · Quotation Basedteams of all sizes
GustoModern HR for Growing Businesses9.7★★★★ 4.38(947)FreeFree Trial · Subscription · Quotation Basedsmall & mid-size businesses
HomebaseStreamline team collaboration with Homebase.9.7★★★★ 4.41(131)FreeFree Trial · Freemium · Subscriptionteams of all sizes
PaycorTransform your workforce with Paycor.9.6★★★★ 3.9(552)FreeFree Trial · Quotation Basedteams of all sizes
ZenefitsStreamline payroll and stay compliant with ease.9.5★★★★★ 4.5(545)FreeFree Trial · Subscription · Quotation Basedsmall & mid-size businesses
OnPayStreamline your payroll process and save time and money.9.4★★★★★ 4.96(447)FreeFree Trial · Subscriptionteams of all sizes
factoHRStreamline HR management and focus on growth.9.3★★★★ 3.95(10)FreeFree Trial · Quotation Basedteams of all sizes

9.2

SpotScore

QuickBooks Payroll - Payroll Software

QuickBooks Payroll

Streamline your payroll process with ease.

Best for: SMB teams

Start Free Trial

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What is QuickBooks Payroll?

QuickBooks Payroll makes it easy to stay on top of your HR needs. It’s payroll software that gives you the power to handle all the payroll processing you need, from modeling an employee’s paycheck to tracking deductions and taxes. Whether you need a few employees or thousands, QuickBooks ...

Read more about QuickBooks Payroll
Free TrialTry Free →

8.8

SpotScore

Square Payroll - Payroll Software

Square Payroll

Streamline your payroll with ease.

Best for: SMB teams · Mid-market · Enterprise

Start Free Trial

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What is Square Payroll?

Square Payroll is payroll software for small businesses and sole proprietors, particularly those already running payments or point-of-sale through Square's ecosystem. It automates pay runs, tax filings, and direct deposit, and pulls time tracking data directly from Square tools to eliminate ...

Read more about Square Payroll
Free TrialTry Free →

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Reach in-market buyersRank above rivals2M+ buyers a year

8.7

SpotScore

Microkeeper - Payroll Software

Microkeeper

Efficiency meets affordability - simplify your payroll process.

Best for: SMB teams · Mid-market · Enterprise

Start Free Trial

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What is Microkeeper?

Microkeeper is a user-friendly payroll software that connects you with the world of business payroll processing: delivering quick online setup, automated time keeping and more. Payroll processing has never been easier or more affordable. Microkeeper gives you simplicity and convenience in ...

Read more about Microkeeper
Free TrialTry Free →

8.5

SpotScore

Paybooks - Payroll Software

Paybooks

Effortlessly manage payroll with Paybooks.

Best for: SMB teams · Mid-market · Enterprise

Start Free Trial

Add to compare

What is Paybooks?

Paybooks is payroll software for HR teams in mid-sized to large companies managing payroll across multiple business units or tax jurisdictions. It handles salary calculation, statutory compliance, and supports both cloud and on-premise deployment depending on IT policy. Setup requires ...

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Free TrialTry Free →·

Paybooks offers custom pricing plan

7.6

SpotScore

ADP Payroll Services - Payroll Software

ADP Payroll Services

Efficient HR solutions at your fingertips.

Best for: SMB teams · Mid-market · Enterprise

Start Free Trial

Add to compare

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What is ADP Payroll Services?

ADP Payroll Services offers a comprehensive suite of tools designed to help businesses of all sizes comply with payroll, taxes, and other HR regulations. The latest tools from ADP provide access to a live HR support team, a job description wizard, employee handbook guidelines, proactive ...

Read more about ADP Payroll Services
Free TrialTry Free →·

ADP Payroll Services offers custom pricing plan

9.8

SpotScore

BambooHR - HR Software

BambooHR

Streamline your HR processes for better business results.

Best for: SMB teams · Mid-market · Enterprise

Start Free Trial

Add to compare

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Watch Demo

What is BambooHR?

BambooHR is an HR platform built for small and mid-sized businesses — typically 10 to 500 employees — covering employee records, onboarding, time-off tracking, and performance management in one system. It replaces fragmented spreadsheets and disconnected tools by centralizing all employee data ...

Read more about BambooHR
Free TrialTry Free →·

BambooHR offers custom pricing plan

9.7

SpotScore

Gusto - Payroll Software

Gusto

Modern HR for Growing Businesses

Best for: SMB teams · Mid-market

HIPAA
Start Free Trial

Add to compare

watch-demo

Watch Demo

What is Gusto?

Gusto is a comprehensive HR platform designed to help businesses of all sizes thrive. Whether you’re just starting out or scaling rapidly, Gusto provides the tools and guidance you need to grow and nurture your team. Trusted by over 300,000 businesses across the U.S., Gusto combines payroll, ...

Read more about Gusto
Free TrialTry Free →·

Starts from $49/user/month when monthly

9.7

SpotScore

Homebase - Employee Scheduling Software

Homebase

Streamline team collaboration with Homebase.

Best for: SMB teams · Mid-market · Enterprise

Start Free Trial

Add to compare

watch-demo

Watch Demo

What is Homebase?

Homebase is a comprehensive time-tracking software developed by experienced people managers to enhance team collaboration and efficiency. It simplifies employee time tracking, scheduling, and payroll management, reducing administrative workload. The platform allows users to generate insightful ...

Read more about Homebase
Free TrialTry Free →·

Starts from $0/ location / month when monthly, also offers free forever plan

9.6

SpotScore

Paycor - HR Software

Paycor

Transform your workforce with Paycor.

Best for: SMB teams · Mid-market · Enterprise

Start Free Trial

Add to compare

watch-demo

Watch Demo

What is Paycor?

Paycor is a human capital management platform for mid-size businesses and nonprofits that need payroll processing, time tracking, benefits administration, and employee onboarding managed in a single system. It eliminates the need for separate payroll and HR tools by centralizing people ...

Read more about Paycor
Free TrialTry Free →·

Paycor offers custom pricing plan

9.5

SpotScore

Zenefits - Payroll Software

Zenefits

Streamline payroll and stay compliant with ease.

Best for: SMB teams · Mid-market

Start Free Trial

Add to compare

watch-demo

Watch Demo

What is Zenefits?

Zenefits is an all-in-one HR, payroll, and benefits administration platform for growing companies that want to consolidate onboarding, time-off tracking, payroll processing, and compliance management in a single system. It eliminates the common pattern of using separate tools for HR records, ...

Read more about Zenefits
Free TrialTry Free →·

Zenefits offers custom pricing plan

9.4

SpotScore

OnPay - Payroll Software

OnPay

Streamline your payroll process and save time and money.

Best for: SMB teams · Mid-market · Enterprise

Start Free Trial

Add to compare

watch-demo

Watch Demo

What is OnPay?

OnPay is an intuitive online payroll software designed to meet the needs of supervisors, managers, payroll specialists and people who manage pay for hourly or salaried staff. OnPay helps companies of all sizes reduce costs for processing payroll checks, making tax reports, tracking down pay ...

Read more about OnPay
Free TrialTry Free →·

Starts from $40/Month

9.3

SpotScore

factoHR - HR Software

factoHR

Streamline HR management and focus on growth.

Best for: SMB teams · Mid-market · Enterprise

Start Free Trial

Add to compare

watch-demo

Watch Demo

What is factoHR?

FactoHR is a mobile-first, fully integrated HCM platform designed to empower businesses in building a high-performing workforce while streamlining HR operations. The solution offers a feature-rich mobile app, enabling employees to access their data and perform HR tasks anytime, anywhere, ...

Read more about factoHR
Free TrialTry Free →·

factoHR offers custom pricing plan

The main HR3 Payroll competitors

Buyers comparing HR3 Payroll usually weigh it against these 12 payroll software competitors, starting with QuickBooks Payroll, Square Payroll and Microkeeper. Each is compared against HR3 Payroll on rating, pricing and feature coverage below.

Sites and apps like HR3 Payroll

Searches for "sites like HR3 Payroll" and "apps like HR3 Payroll" land on the same shortlist as "HR3 Payroll alternatives" — the 12 options below cover both, whether you want a like-for-like replacement or something lighter.

What earned each one a spot

QuickBooks Payroll9.2Best for small businesses

Automates tax filing, paycheck generation, and sends real-time notifications to reduce manual effort.

Watch for: Steeper pricing compared to alternative payroll systems, especially for smaller businesses or limited payroll needs.

Square Payroll8.8Best for teams of all sizes

Square Payroll integrates effortlessly with existing payroll providers, making it an ideal plug-and-play solution without the need for major system overhauls.

Watch for: While great for small businesses, it may lack some of the advanced reporting, analytics, or customization features needed by larger enterprises.

Microkeeper8.7Best for teams of all sizes

Consolidates payroll, rosters, timesheets, and HR tasks into one platform.

Watch for: Occasional app or feature downtime causes minor disruptions.

Paybooks8.5Best for teams of all sizes

Paybooks offers a robust suite of payroll functionalities that can handle end-to-end payroll processing, making it suitable for a wide range of organizational needs.

Watch for: Due to its high level of customization, setting up Paybooks to suit specific business structures and jurisdictions can be time-consuming without expert assistance.

ADP Payroll Services7.6Best for teams of all sizes

User-friendly interface, making it accessible even for non-technical users.

Watch for: Periodic customer service complaints regarding responsiveness and reliability.

BambooHR9.8Best for teams of all sizes

Automates HR processes including document signing, onboarding, and payroll.

Watch for: Lacks advanced features found in more comprehensive HRIS platforms.

Gusto9.7Best for small & mid-size businesses

Handles payroll processing and tax compliance without requiring accounting expertise.

Watch for: Occasional reports of errors in support communication or inconsistencies in handling complex account issues.

Homebase9.7Best for teams of all sizes

Streamlines scheduling processes, making it easy to set and manage employee schedules.

Watch for: Limited customization options in the free version, with some advanced functionalities restricted.

Paycor9.6Best for teams of all sizes

Covers payroll, recruiting, onboarding, performance management, and benefits administration in one platform.

Watch for: Customer service response times are consistently slow, with no assigned representatives and frequent case mismanagement.

Zenefits9.5Best for small & mid-size businesses

Handles onboarding, offboarding, payroll, and benefits administration in one workflow, reducing paperwork.

Watch for: Customer support response times are slow, with limited availability during urgent situations.

OnPay9.4Best for teams of all sizes

OnPay stands out for its intuitive design, making it easy for supervisors, managers, and payroll specialists to navigate and execute payroll tasks efficiently

Watch for: While great for SMBs, larger companies might find customization options less robust for complex payroll needs.

factoHR9.3Best for teams of all sizes

Simplifies payroll and attendance management with features like punch in/out tracking and automated calculations.

Watch for: Limited mention of advanced or specialized features may reflect a lack of versatility for larger or complex organizations.

Why teams look for a HR3 Payroll alternative

Switching away from HR3 Payroll is usually triggered by one or more of these sticking points:

  • While basic operations are simple, advanced features may require training.
  • The user interface could benefit from a modern refresh to match today's design standards.
  • Some users may experience delays in support response during peak periods.

What to look for in a HR3 Payroll alternative

The hard numbers across these 12 payroll software free alternatives: 12 offer a free tier; paid plans run $2.25–$49, with Microkeeper the cheapest entry point; and Square Payroll is the highest rated at 5 across 15 reviews.

Behind the ranking.

Frequently Asked Questions (FAQs)

Stuck on something? We're here to help with all the questions and answers in one place.

The top-rated alternatives to HR3 Payroll are Square Payroll (5.0★), Paybooks (5.0★), OnPay (5.0★). Compare all 12 alternatives side-by-side above.

When evaluating alternatives to HR3 Payroll, prioritize: Tax Management, Attendance Tracking, Benefits Management, Direct Deposit, Multi-country, transparent pricing, free trial availability, and integrations with your existing tools. Use the filters above to compare by feature, budget, and team size.

Migration difficulty depends on how deeply HR3 Payroll is integrated into your workflows. Most alternatives offer data export/import tools and dedicated onboarding support. We recommend narrowing to 2–3 options, running a free trial, and checking each vendor's migration guides before committing.

Which HR3 Payroll alternative fits your needs?

  • On a budget / just exploring: start with a free tier — QuickBooks Payroll, Square Payroll and Microkeeper let you evaluate without paying upfront.
  • If real-user ratings matter most: Square Payroll has the strongest star rating (5★) among the options with verified reviews.
  • Want the safest pick: QuickBooks Payroll has the highest Spotsaas Score (9.2) in this list — a strong default if you're unsure.

Leaving HR3 Payroll behind

Planning your exit from HR3 Payroll? Pull your data out first and confirm the replacement imports it without loss. Make sure the workflows you depend on are covered, run a short trial before committing, and keep HR3 Payroll live as a fallback until you're settled. Many tools here offer a free path to test.

Disclaimer: This research has been collated from a variety of authoritative sources. We welcome your feedback at [email protected].