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7 Best HR3 Payroll Alternatives for Android in 2026

Explore 7 alternatives to HR3 Payroll — vetted by our editors with real user reviews, pricing, and feature comparisons.

HR3 Payroll alternatives: our 7 top picks at a glance

Quick answer

The best payroll software tools to replace HR3 Payroll are QuickBooks Payroll, Square Payroll and Microkeeper. QuickBooks Payroll sits at number one with a SpotScore of 9.2 and 4.4★ from reviewers. Compare all 7 on score, rating, and pricing below.

Some teams leave HR3 Payroll for the price, others for features or fit. Whatever yours is, these 7 payroll software alternatives are the picks we'd start with, ranked by SpotScore (real-user satisfaction plus market presence), ratings, and pricing. Editors review each. The table is your quick comparison; the sections below add depth.

ProductSpotScoreRatingPricingBest for
QuickBooks PayrollStreamline your payroll process with ease.9.2★★★★☆ 4.4(56)Freefrom $49/mosmall businesses
Square PayrollStreamline your payroll with ease.8.8★★★★★ 5(15)Freefrom $34 /User/Monthteams of all sizes
MicrokeeperEfficiency meets affordability - simplify your payroll process.8.7★★★★★ 4.69(90)Freefrom $2.25 /User/Monthteams of all sizes
APS PayrollEfficient payroll management, with precision and security.8.7★★★★★ 4.69(352)Quotation Basedteams of all sizes
PrimePayStreamline your payroll with ease.8.6★★★★★ 4.57(61)Quotation Basedteams of all sizes
PaybooksEffortlessly manage payroll with Paybooks.8.5★★★★★ 5(3)FreeFree Trial · Quotation Based · Subscriptionteams of all sizes
JustLoginEmpowering businesses. Engaging employees.7.9★★★★☆ 3.75(2)Quotation Basedteams of all sizes

9.2

SpotScore

QuickBooks Payroll - Payroll Software

QuickBooks Payroll

Streamline your payroll process with ease.

Best for: SMB teams

Start Free Trial

4.4

56 verified reviews

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What is QuickBooks Payroll?

QuickBooks Payroll makes it easy to stay on top of your HR needs. It’s payroll software that gives you the power to handle all the payroll processing you need, from modeling an employee’s paycheck to tracking deductions and taxes. Whether you need a few employees or thousands, QuickBooks ...

Read more about QuickBooks Payroll
Free TrialTry Free →

8.8

SpotScore

Square Payroll - Payroll Software

Square Payroll

Streamline your payroll with ease.

Best for: SMB teams · Mid-market · Enterprise

Start Free Trial

5.0

15 verified reviews

Add to compare

What is Square Payroll?

Square Payroll is payroll software for small businesses and sole proprietors, particularly those already running payments or point-of-sale through Square's ecosystem. It automates pay runs, tax filings, and direct deposit, and pulls time tracking data directly from Square tools to eliminate ...

Read more about Square Payroll
Free TrialTry Free →

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8.7

SpotScore

Microkeeper - Payroll Software

Microkeeper

Efficiency meets affordability - simplify your payroll process.

Best for: SMB teams · Mid-market · Enterprise

Start Free Trial

4.7

90 verified reviews

Add to compare

What is Microkeeper?

Microkeeper is a user-friendly payroll software that connects you with the world of business payroll processing: delivering quick online setup, automated time keeping and more. Payroll processing has never been easier or more affordable. Microkeeper gives you simplicity and convenience in ...

Read more about Microkeeper
Free TrialTry Free →

8.7

SpotScore

APS Payroll - Payroll Software

APS Payroll

Efficient payroll management, with precision and security.

Best for: SMB teams · Mid-market · Enterprise

Get Pricing Details

4.7

352 verified reviews

Add to compare

What is APS Payroll?

APS Payroll is a payroll and HR management platform for mid-sized businesses that need customizable reporting, employee self-service, and third-party integrations alongside core payroll processing. Its report builder lets HR teams generate custom outputs for workforce cost analysis without ...

Read more about APS Payroll

APS Payroll offers custom pricing plan

8.6

SpotScore

PrimePay - Payroll Software

PrimePay

Streamline your payroll with ease.

Best for: SMB teams · Mid-market · Enterprise

Get Pricing Details

4.6

61 verified reviews

Add to compare

What is PrimePay?

PrimePay is payroll software that offers a full payroll for small and mid-sized businesses. It is designed to be simple and easy to use, while maintaining the requirements needed for a company's payroll. Both new companies just starting on Payroll and companies already on Payroll will benefit ...

Read more about PrimePay

PrimePay offers custom pricing plan

8.5

SpotScore

Paybooks - Payroll Software

Paybooks

Effortlessly manage payroll with Paybooks.

Best for: SMB teams · Mid-market · Enterprise

Start Free Trial

5.0

3 verified reviews

Add to compare

What is Paybooks?

Paybooks is payroll software for HR teams in mid-sized to large companies managing payroll across multiple business units or tax jurisdictions. It handles salary calculation, statutory compliance, and supports both cloud and on-premise deployment depending on IT policy. Setup requires ...

Read more about Paybooks
Free TrialTry Free →·

Paybooks offers custom pricing plan

7.9

SpotScore

JustLogin - Payroll Software

JustLogin

Empowering businesses. Engaging employees.

Best for: SMB teams · Mid-market · Enterprise

Get Pricing Details

3.8

2 verified reviews

Add to compare

What is JustLogin?

JustLogin is an employee-centred HR software provider in Southeast Asia that offers a comprehensive selection of HR and office applications to suit the needs of the globally connected business community. From IKEA to Nippon Airways to Inside Scoop, a variety of renowned businesses across ...

Read more about JustLogin

JustLogin offers custom pricing plan

The main HR3 Payroll competitors

Buyers comparing HR3 Payroll usually weigh it against these 7 payroll software competitors, starting with QuickBooks Payroll, Square Payroll and Microkeeper. Each is compared against HR3 Payroll on rating, pricing and feature coverage below.

Sites and apps like HR3 Payroll

Searches for "sites like HR3 Payroll" and "apps like HR3 Payroll" land on the same shortlist as "HR3 Payroll alternatives" — the 7 options below cover both, whether you want a like-for-like replacement or something lighter.

What earned each one a spot

QuickBooks Payroll9.2Best for small businesses

Automates tax filing, paycheck generation, and sends real-time notifications to reduce manual effort.

Watch for: Steeper pricing compared to alternative payroll systems, especially for smaller businesses or limited payroll needs.

Square Payroll8.8Best for teams of all sizes

Square Payroll integrates effortlessly with existing payroll providers, making it an ideal plug-and-play solution without the need for major system overhauls.

Watch for: While great for small businesses, it may lack some of the advanced reporting, analytics, or customization features needed by larger enterprises.

Microkeeper8.7Best for teams of all sizes

Consolidates payroll, rosters, timesheets, and HR tasks into one platform.

Watch for: Occasional app or feature downtime causes minor disruptions.

APS Payroll8.7Best for teams of all sizes

Integration with Sage Intacct simplifies operations and reduces manual work.

Watch for: Implementation can be disorganized with some inconsistencies and delays in setup or onboarding.

PrimePay8.6Best for teams of all sizes

Customer service is responsive, with representatives frequently singled out for praise.

Watch for: Lack of dedicated account representatives for some users, leading to inefficiencies and inconsistent problem resolution.

Paybooks8.5Best for teams of all sizes

Paybooks offers a robust suite of payroll functionalities that can handle end-to-end payroll processing, making it suitable for a wide range of organizational needs.

Watch for: Due to its high level of customization, setting up Paybooks to suit specific business structures and jurisdictions can be time-consuming without expert assistance.

JustLogin7.9Best for teams of all sizes

JustLogin places user experience at the forefront, maintaining HR tasks are intuitive and employee-friendly, which encourages higher engagement and self-service efficiency.

Watch for: While optimized for Southeast Asia, companies with a broader global footprint might face limitations in meeting HR compliance requirements outside the region.

Why teams look for a HR3 Payroll alternative

Switching away from HR3 Payroll is usually triggered by one or more of these sticking points:

  • While basic operations are simple, advanced features may require training.
  • The user interface could benefit from a modern refresh to match today's design standards.
  • Some users may experience delays in support response during peak periods.

What to look for in a HR3 Payroll alternative

The hard numbers across these 7 payroll software alternatives: 4 offer a free tier; paid plans run $2.25–$49, with Microkeeper the cheapest entry point; and Square Payroll is the highest rated at 5★ across 15 reviews.

Behind the ranking.

Frequently Asked Questions (FAQs)

Stuck on something? We're here to help with all the questions and answers in one place.

The top-rated alternatives to HR3 Payroll are Square Payroll (5.0★), Paybooks (5.0★), Microkeeper (4.7★). Compare all 7 alternatives side-by-side above.

When evaluating alternatives to HR3 Payroll, prioritize: Tax Management, Attendance Tracking, Benefits Management, Direct Deposit, Multi-country, transparent pricing, free trial availability, and integrations with your existing tools. Use the filters above to compare by feature, budget, and team size.

Migration difficulty depends on how deeply HR3 Payroll is integrated into your workflows. Most alternatives offer data export/import tools and dedicated onboarding support. We recommend narrowing to 2–3 options, running a free trial, and checking each vendor's migration guides before committing.

Which HR3 Payroll alternative fits your needs?

  • On a budget / just exploring: start with a free tier — QuickBooks Payroll, Square Payroll and Microkeeper let you evaluate without paying upfront.
  • If real-user ratings matter most: Square Payroll has the strongest star rating (5★) among the options with verified reviews.
  • Want the safest pick: QuickBooks Payroll has the highest Spotsaas Score (9.2) in this list — a strong default if you're unsure.

Leaving HR3 Payroll behind

Planning your exit from HR3 Payroll? Pull your data out first and confirm the replacement imports it without loss. Make sure the workflows you depend on are covered, run a short trial before committing, and keep HR3 Payroll live as a fallback until you're settled. Many tools here offer a free path to test.

Disclaimer: This research has been collated from a variety of authoritative sources. We welcome your feedback at [email protected].