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Top Alternatives to Zoho Payroll - Better Options for 2025

Comprehensive Payroll Software for Seamless Compliance and Efficiency

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Main Features

  • Access Control
  • Approval Process Control
  • Benefits Management
  • Check Printing

Pricing

  • Starts from $39/month when monthly

  • Free Trial available

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Alternatives of Zoho Payroll with

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List of the Top Zoho Payroll alternatives as of June 2025

Compare business software, products, and services to find the best solution for your business or organization. Use the filters on the left to drill down by category, pricing, features, market segment, user ratings, and more.

9.2

Spot Score

Paychex Flex - Payroll Software

Paychex Flex

RECOMMENDED

Streamline your payroll with ease.

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Product Description

Paychex Flex is a cloud-based payroll software for mid- to large-sized employers, delivering the tools you need to run your business and support your people. This payroll system provides everything you need in just one simple package. It includes: W-2 and 1099 printing, Payroll processing, ...

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Common Features

  • Wage Garnishment

  • W-2 Preparation

  • Self Service Portal

+ 9 more

Unique Features

  • Leave Tracking (Vacation)

  • Direct Deposit

  • Compensation Management

+ 14 more

Pricing

Paychex Flex offers custom pricing plan

Frequently Asked Questions (FAQs)

Stuck on something? We're here to help with all the questions and answers in one place.

Popular alternative is Paychex Flex

Key factors include Self Service Portal, Mobile Access, Mobile App, Payroll, Payroll Management and pricing.

Tools like Paycom, BambooHR, Gusto, Paycor and QuickBooks Payroll are best for small businesses for Payroll Software.

This software is researched and edited by

Rajat Gupta is the founder of Spotsaas, where he reviews and compares software tools that help businesses work smarter. Over the past two years, he has analyzed thousands of products across CRM, HR, AI, and finance — combining real-world research with a strong foundation in commerce and the CFA program. He's especially curious about AI, automation, and the future of work tech. Outside of SpotSaaS, you'll find him on a badminton court or tracking the stock market.

Disclaimer: This research has been collated from a variety of authoritative sources. We welcome your feedback at [email protected].

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